¶ Deconvolution primer
¶ Requirements
Please consult the detailed Good Practices page which details the schematic below.
¶ Deconvolution tools
Here is a non-exhaustive list of deconvoltion tools froma round the web. Some commercial, some open source.
| Tool | Cloud | Workstation | GPU | Pros | Cons |
|---|---|---|---|---|---|
| Huygens Remote Manager | hrm-biop | - | - | Theroretical PSF, Algorithms, Batch | |
| Huygens Pro | - | Platypus | X | "python" scripting | Scripting requires file conversion |
| DeconvolutionLab2 | - | X | - | Fiji plugin, Can Generate Widefield PSF | CPU only = slow |
| clij2 | biop-desktop | X | X | Fiji plugin | Need for PSF |
| flowdec | - | X | X | python | Need for PSF, no longer maintained |
So far, we do not recommend any Deep-Learning tool for deconvolution.