¶ Filter data
¶ Filter using annotations
Images can be filtered by Name, Tag, Key-Value pairs or Rating.
- Click on the
Thumbnailsview - In the centre pane, to the left, click on
Add filter - Choose the filter you want.
¶ Advanced filtering: OMERO.parade
¶ Description
OMERO.parade is a metadata-mining plugin for OMERO webclient. Among other things, it offers more advanced filtering options than the filtering tool available from the webclient's main page.
Supported metadata includes
- number of ROIs
- Key-Value pairs
- data stored in OMERO.tables
- data stored in .csv files.
Please visit the OMERO Parade wiki page to learn how to use OMERO.parade to filter data.
¶ Searching data
The search tool can be use to find specific images. Click on the search field on the top left corner of the window.
There is a syntax to respect if you want to serach efficiently.
- If you type the name of an image or some key words, OMERO will find every images/datasets/tags/channels_name/key/id… that contain the string/number. It will bascially find many images that are not always linked to the ones you want to get.
- To find an image by its name, use the following syntaxe :
name:"full-name" or name:"part-of-the-name". If you do not put the quotations, it will not work. - To find an image by its tag, use the following syntaxe :
tag:"tag-name". If you do not put the quotations, it will not work. - To find an image by its key-value pair, use the following syntaxe :
key:value. DO NOT PUT QUOTATIONS FOR KEY-VALUE PAIRS SEARCHING. In order to be searchable, DO NOT tokenize the key nor the value with blanks - You can combine them in the advanced search by using
AND,ORandNOT(ex.name:"full-name" AND tag:"tag-name")
Remarque : Searching is case sensitive for key-value pairs.
BE CAREFUL : NEVER put some special characters (+./.*.<.>.\. …) for images/datasets/tag/key-value-pairs name because the search tool ignore them and it can lead to unexpected behavior.
Tips : we suggest to tokenize all of your names using underscores in order to tag and search efficiently.
Searching with name
Searching with key-value pairs
Searching with tag
- After filling the search field, you can click on the glass.
- A new page is displayed with the searching panel on the left.
- You can have access to more choices to refine your search and switch between basic and standard search tab
Remarque : whatever the basic or advanced tab selected, the same searching actions can be done.
For more information, please visit the official omero guide for searching data.
For more advanced information, see the Search Module API page.
¶ More documentation on this topic...
To learn more about searching OMERO images, we recommend you to visit the official OMERO Annotation guide.